PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.1153s0050.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family ERF
Protein Properties Length: 284aa    MW: 30574.4 Da    PI: 7.4995
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.1153s0050.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP262.11.2e-19152202255
                     AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                             +y+GVr+++ +g+++AeIrdp +ng  +r++lg+f tae+Aa a+++a+ +++g
  SapurV1A.1153s0050.1.p 152 HYRGVRQRP-WGKFAAEIRDPAKNG--ARVWLGTFETAEDAALAYDRAAYRMRG 202
                             8********.***********9987..*************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000183.34E-31151210No hitNo description
Gene3DG3DSA:3.30.730.102.6E-32151210IPR001471AP2/ERF domain
SuperFamilySSF541713.14E-23152212IPR016177DNA-binding domain
PROSITE profilePS5103224.21152210IPR001471AP2/ERF domain
SMARTSM003801.3E-39152216IPR001471AP2/ERF domain
PfamPF008471.1E-13152202IPR001471AP2/ERF domain
PRINTSPR003675.7E-11153164IPR001471AP2/ERF domain
PRINTSPR003675.7E-11176192IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 284 aa     Download sequence    Send to blast
MYGQNMLDQS DYAFLESVRL HLLGETISSA AASSCFNPDT TNSAISTATT PATFTPAPVY  60
CRSTSFSSLY PCLTENWGDL PLKVDDSEDM FLYGVLRDAV TVGWVPSLMT DQFIEHSLPA  120
VKLESSENLT ISPPRAEAPI AEPAVVPSKG KHYRGVRQRP WGKFAAEIRD PAKNGARVWL  180
GTFETAEDAA LAYDRAAYRM RGSRALLNFP LRVNSGEPDP VRVTSKRSSP EPSSSVESAS  240
PKRRKKVGGA AGNATVIAQA GMQMTNGVGY QVGTHGEQLL VAR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A6e-44148217170ATERF1
3gcc_A6e-44148217170ATERF1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1240246PKRRKKV
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2089990.0AC208999.1 Populus trichocarpa clone POP021-B12, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006368978.11e-169hypothetical protein POPTR_0001s15390g
SwissprotO803371e-90EF100_ARATH; Ethylene-responsive transcription factor 1A
TrEMBLB9NBC41e-169B9NBC4_POPTR; Uncharacterized protein
STRINGPOPTR_0001s15390.11e-168(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF22393382
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17500.12e-72ethylene responsive element binding factor 1